Protein Info for B158DRAFT_1203 in Kangiella aquimarina DSM 16071

Annotation: flavoprotein, HI0933 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12831: FAD_oxidored" amino acids 5 to 145 (141 residues), 30.1 bits, see alignment E=1.2e-10 PF00890: FAD_binding_2" amino acids 5 to 48 (44 residues), 33.6 bits, see alignment 9.4e-12 PF03486: HI0933_like" amino acids 5 to 393 (389 residues), 507.9 bits, see alignment E=6.7e-156 TIGR00275: flavoprotein, HI0933 family" amino acids 6 to 393 (388 residues), 446.5 bits, see alignment E=4.1e-138

Best Hits

Swiss-Prot: 50% identical to Y933_HAEIN: Uncharacterized protein HI_0933 (HI_0933) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07007, (no description) (inferred from 94% identity to kko:Kkor_1773)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>B158DRAFT_1203 flavoprotein, HI0933 family (Kangiella aquimarina DSM 16071)
MHRKDVIIIGAGAAGLMCGITAGQRERSVAILDHANKVGKKILMSGGGRCNFTNYYAEPS
NYLSHNPHFCKSALSRYTQWDFIALVEKHGIPYHEKKLGQLFCDNKAKDIVNMLLDECAQ
AGVDVRTECSIQQVNKVDDGFIIQSSQGKWHCQSLVIATGGLSIPTMGATGFGYDIARQF
GLKLFPTYAALVPFTLTPKLLDQFAGLSGTSADAFVSCNGQSFRENILFTHRGLSGPSIL
QISSYWQPGDAITINLFPDVDLYEQLKQLQQERPKAHINTVLAEQLTKKLADRLCEIWFV
DYVQKPLAELSNEALQNIAEQLQSWQLKPTGTEGYRTAEVTMGGVDTDEVSSKTFEAKKV
SGLYFIGEVLDVTGHLGGFNFQWAWASGFASGQYV