Protein Info for B158DRAFT_1169 in Kangiella aquimarina DSM 16071

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 273 to 292 (20 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 327 to 350 (24 residues), see Phobius details TIGR04408: LPS export ABC transporter permease LptG" amino acids 3 to 352 (350 residues), 380.8 bits, see alignment E=2.3e-118 PF03739: LptF_LptG" amino acids 7 to 352 (346 residues), 263.8 bits, see alignment E=1.2e-82

Best Hits

KEGG orthology group: K11720, lipopolysaccharide export system permease protein (inferred from 86% identity to kko:Kkor_1820)

Predicted SEED Role

"FIG000906: Predicted Permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>B158DRAFT_1169 Predicted permeases (Kangiella aquimarina DSM 16071)
MNILRFYIGKTILATSIMTLAMLAIIRVLFTLIDESGDFGKGSYQFVDGLSYSLLLAPQY
IYEFFPMAILIGSIAGLGLLASRSELTVMRAAGKTTMQIVGSALSYGLILIAFAIFLGEY
VSPKTTRMAEDIRNRAILGDQLVKGEQGVWVKDGGKMVHVKDVIGNERMEGVSIYQFDQS
QTLESVIHASSALLDNNIWQLKNGYKSIITQDGIERQRFDAFEWQTNIEMENLSVLSDDP
ETLDIVSLYTYRQYLANNGLETQSYDLAFWRKLIQPISTAIMIVLAASFVFGPMRSVSMG
ARVLVGVLTGMAYFFAVRTFGPVSLVFGMPAIFGAILPPAIFAAGAWYLLRRAG