Protein Info for B158DRAFT_1095 in Kangiella aquimarina DSM 16071

Annotation: DNA-directed DNA polymerase III (polc)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1161 TIGR00594: DNA polymerase III, alpha subunit" amino acids 5 to 1031 (1027 residues), 1360.6 bits, see alignment E=0 PF02811: PHP" amino acids 7 to 171 (165 residues), 142 bits, see alignment E=5.6e-45 PF07733: DNA_pol3_alpha" amino acids 290 to 559 (270 residues), 357.9 bits, see alignment E=9.1e-111 PF17657: DNA_pol3_finger" amino acids 562 to 736 (175 residues), 223.9 bits, see alignment E=1.9e-70 PF14579: HHH_6" amino acids 809 to 899 (91 residues), 107.2 bits, see alignment 1e-34 PF01336: tRNA_anti-codon" amino acids 997 to 1070 (74 residues), 32.4 bits, see alignment 1.9e-11

Best Hits

Swiss-Prot: 63% identical to DPO3A_VIBCH: DNA polymerase III subunit alpha (dnaE) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 60% identity to vsa:VSAL_I2412)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1161 amino acids)

>B158DRAFT_1095 DNA-directed DNA polymerase III (polc) (Kangiella aquimarina DSM 16071)
MTPRFVHLKMHTEYSMVDSVVRVKPLIAHCKEQNIPAIAMTDQMNMCGLVKFYSQSVSAG
IKPIAGADLLIQNPNDEDDHFRVTALCMNNTGYLNLKYLISRAYLKNQHRGLPLAKKEWL
PEFAEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQRTGRPQENEY
IHQVIGLAQGASTPVVATNDVRFLHKEDFDAHEARVCINQGRVLADPRRPRDYSEQQYLR
SEAEMVELFEDIPEALENSVEIAKRCNLDMRLGEYFLPEFPIPEGMTIEQYFEKVSKDGL
EERLDQLYDRNAENFAEIRKEYDERLQIELDVINQMGFPGYFLIVADFIQWSKNNGVPVG
PGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIDYVA
ERYGRNSVSQIITFGTMAAKAVIRDVGRVLSHPYGFVDKLAKLIPFEVGMTLEKAFEQEP
ELPRLYEEDEDVREMWDLARKLEGVTRNAGKHAGGVVIAPNDLEEFAPLYCDETGHNIVT
QFDKDDVESAGLVKFDFLGLRTLTIIDWALETANAIIAKKGEDPIDIAKIDTEDQQVFDL
LQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQSGMVDNFINRKHGRE
KVSYPDPHYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADILRRAMGKKKPEE
MEKQRSIFKEGSIKNGVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVAYQTAWLKTHHP
AAFMAAVMSSDMDNTDKVVTYVEDAQNSGLTITPPDVNKGQYRFSVDEEGRIVYGIGAIK
GVGEGAIESIVKEREANGPYKDLFDFCSRVDLKKANRRTLEALIRAGAMDLIGPNRATLM
ASLDEAVKAAEQFNKSQAAGQDDLFGSVVTTTATEQHQYIRVKPWTDEQVLQGEKETLGL
YLTGHPIDRYIPEIKQMSITRLRDLQPTGRGNSARVVGLIVGMRVMNTKRGDKMAILTLD
DKSGRCDVTVYAETFETYRHLLSRDNVIVVDGEARHDDYSGGTSVSANSVMSFEQAREQY
CKKIVITISDSIIGPDTMVELEEKISQNRDGACPVIINFQYQQKQIAGDFVMSEDWCVQP
VDSLVFSLKHIPGCVDARVEY