Protein Info for B158DRAFT_1002 in Kangiella aquimarina DSM 16071

Annotation: Membrane protein involved in colicin uptake

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 316 to 332 (17 residues), see Phobius details amino acids 338 to 356 (19 residues), see Phobius details PF13519: VWA_2" amino acids 102 to 208 (107 residues), 44.4 bits, see alignment E=3.4e-15 PF07719: TPR_2" amino acids 419 to 451 (33 residues), 23.8 bits, see alignment (E = 5e-09)

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 78% identity to kko:Kkor_1984)

Predicted SEED Role

"TPR domain protein in aerotolerance operon"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (577 amino acids)

>B158DRAFT_1002 Membrane protein involved in colicin uptake (Kangiella aquimarina DSM 16071)
MFDFLPELTQLHFIRPWAWLLLIPVILLWWLYRTKGQQASGWAKLIDQHLLGWMMPNSQL
GKSIKWQKNLLLTMWILLVIALSGPSWKKLPQPVFSNLASRVIVLDLSSSMDAQDVKPSR
LARAKFKLTDILKAIKDGQTGFVVYAGDGFILSPLTSDTDTIDNMVEVLSTNLMPLVGSK
PDKGIEKAIELLDNGAAGEGDIIWITDGGDEKELSQIKSLLSKTSYDLNILAIGTAEGAP
IPMSNGSGFVKDNKGNIVIPKLNYNELANFADDIGATLTPMTAGNQDIELLLQRPQLTVD
ERLEKQDIMADSWEDAGFWLLFLALPILLLGFKHRSMFAIVLVISFGSFTSTQAQANPLE
SLFLNKDQQAKKLLNEQQYEEAYKRFEDPEWKAVAAYRNGDYQAAENNFNNGQQLSPADK
LYNKANAQALAGELEGAVSSYKEALQLNPNHLDALYNKKIVEDLLKQKQQEQQQSQQQDK
SQSEQEQNDQQQEQQQQDQNSQSDESSEQQQQPSEQQQQKPELTEEELQQQFKEEEKDQE
LEQWLKRLPDDPGGLLRRKMYQEYRERGHKQHVDETW