Protein Info for B158DRAFT_0949 in Kangiella aquimarina DSM 16071

Annotation: ABC-type transport system, involved in lipoprotein release, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF12704: MacB_PCD" amino acids 23 to 255 (233 residues), 60.1 bits, see alignment E=3.8e-20 PF02687: FtsX" amino acids 285 to 394 (110 residues), 51.7 bits, see alignment E=8.7e-18

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 92% identity to kko:Kkor_2031)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>B158DRAFT_0949 ABC-type transport system, involved in lipoprotein release, permease component (Kangiella aquimarina DSM 16071)
MISLAGRDIMHSWGKFVFTGFGLGLLIGVTLIMAGVYRGMVDDAKVLLDNSSADLWVVQK
NTLGPYAESSSIYDDEWRGIQSMPGVAQTANVTYLTMQVRHGDRDVRSMISGIAAGQPGL
PGWPPYLIEGRQITRGHYEAVADQATGFKIGDSLQIRRNKYTVVGLTRRMVSSNGDPMVF
IPLKDAQEAQFLKDNDAILEQRRRNQQSPEFSQPGNPGLLEALNRSQNNNPYVNSVLVQI
KKGYSAKEVAKSIEKWKRLTVYTREDMEEILIGKLIATSSKQIGMFLVILAVVSAAIVAF
IIYTLTLGKIREIAVLKLIGTRNRTIAGMILQQAIALGVIGFVVGKISATFGAPTFPKYV
LLEPMDSVAGFFAVVIICVLSSVIAIRAALKVDPAEAVGG