Protein Info for B158DRAFT_0911 in Kangiella aquimarina DSM 16071

Annotation: Short-chain dehydrogenases of various substrate specificities

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF00106: adh_short" amino acids 12 to 198 (187 residues), 181.1 bits, see alignment E=3.5e-57 PF08659: KR" amino acids 13 to 188 (176 residues), 56.7 bits, see alignment E=5.9e-19 PF01370: Epimerase" amino acids 15 to 176 (162 residues), 26.5 bits, see alignment E=8.2e-10 PF13561: adh_short_C2" amino acids 18 to 201 (184 residues), 125.8 bits, see alignment E=4.2e-40

Best Hits

KEGG orthology group: None (inferred from 93% identity to kko:Kkor_2076)

Predicted SEED Role

"oxidoreductase( EC:1.1.1.- )"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>B158DRAFT_0911 Short-chain dehydrogenases of various substrate specificities (Kangiella aquimarina DSM 16071)
MSGSEHAAFQHKTVWVTGASSGIGEGLAYALAKKGARLILSARRMDELERVKANCEHSDR
HHCVELDLAHSEQFDSLVAQVINEYGPIDILINNAGLSQRSKVLETDLDVHRRLMEINYF
GTVKLTQSLLPHLLERKQGGVITVSSLVGKFTTPLRSAYAASKHAITAYMDSLRAELHGQ
GLQFTTIYPGFIKTNLTYKALLADGSEQNKMDDAQEHGMSPEVCAEKILKAWRKGKAEAF
IGGRETNAVYLKRFFPRLFARIVRTAKVT