Protein Info for B158DRAFT_0909 in Kangiella aquimarina DSM 16071

Annotation: Transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 PF00126: HTH_1" amino acids 8 to 67 (60 residues), 82.8 bits, see alignment E=1.4e-27 PF03466: LysR_substrate" amino acids 90 to 289 (200 residues), 122.8 bits, see alignment E=1.3e-39

Best Hits

Swiss-Prot: 53% identical to GCVA_ECOLI: Glycine cleavage system transcriptional activator (gcvA) from Escherichia coli (strain K12)

KEGG orthology group: K03566, LysR family transcriptional regulator, glycine cleavage system transcriptional activator (inferred from 99% identity to kko:Kkor_2078)

Predicted SEED Role

"Glycine cleavage system transcriptional activator GcvA" in subsystem Glycine cleavage system or Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>B158DRAFT_0909 Transcriptional regulator (Kangiella aquimarina DSM 16071)
MSRRLPPLNSLRAFEAAARHLSFTKAAEELFVTQAAISHQIKALEDFLGVQLFIRRNRKL
LLTDEGQLYWPKIRDIFEKLVNATEQVKAQGATGSLTVCVIPTFATLWLIPRLAEFGELH
PEIEVRIKASDVEVDFVREDIDIAIYYGKGEYDGLCCDVLFEEHLTPVCSPDFPQKKNLK
TPEDLKNVTLLHDASTEEWRTWLKSADVTGVNLDHGPVFSHSGMVLQAARHGQGIAMGHS
VLSQMDIETGRLIAPFDIVVDSGYSYDLVCPENSYDRPKVVAFREWLLSKVNEDMDDDVI
F