Protein Info for B158DRAFT_0839 in Kangiella aquimarina DSM 16071

Annotation: NOL1/NOP2/sun family putative RNA methylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 PF17125: Methyltr_RsmF_N" amino acids 14 to 111 (98 residues), 64.2 bits, see alignment E=3.3e-21 TIGR00446: NOL1/NOP2/sun family putative RNA methylase" amino acids 46 to 316 (271 residues), 293.9 bits, see alignment E=4.9e-92 PF01189: Methyltr_RsmB-F" amino acids 123 to 314 (192 residues), 165.1 bits, see alignment E=4.1e-52 PF21150: YebU_pre-PUA_dom" amino acids 337 to 414 (78 residues), 77.3 bits, see alignment E=1.7e-25 PF13636: Methyltranf_PUA" amino acids 430 to 480 (51 residues), 42.2 bits, see alignment 1.7e-14

Best Hits

KEGG orthology group: K11392, ribosomal RNA small subunit methyltransferase F [EC: 2.1.1.-] (inferred from 78% identity to kko:Kkor_2155)

Predicted SEED Role

"Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)" (EC 2.1.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.-

Use Curated BLAST to search for 2.1.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (488 amino acids)

>B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase (Kangiella aquimarina DSM 16071)
MAKRYGHCIMTNISQDFIQHIAQQLNDPDALQALLDYSQKPLRKSIRINSLRADKDSIAH
EWGQAGYQLESIPWCGDGFWIDESHKPLPEGFGNYLPHLAGQFYIQEASSMLPVSALFAA
NPEPNMVLDVAAAPGSKTTQIAARMQNRGLVVANELSASRIKALYANLERTGVSNGVLCH
YDGRQFGEMTPQTFDAILLDAPCGGEGTVRKDPEALSNWSLDSVLSMSDLQKELIISAYK
ALKPGGTLVYSTCTLSKEENQVVCQHLLDQHPDDISVFPLDQLFAGAEDVATKEGYLHVY
PHLFDSEGFFVACFRKKEAPIEEELALDSELGSRFPFIQLSKKDYRDLAEHCSALGWQLA
PIKHLLWQRSKEVWYFPEGIEHLIGKLRMDRIGVKLAESHRSGFRLQHQAVTAFGHEFTQ
QTYELNSEQAVEYYQGRDISISKSGSLKKGEVAILYQGVVIGLAKNLGNKLKNSLPRYLV
NDTPFAEL