Protein Info for B158DRAFT_0758 in Kangiella aquimarina DSM 16071

Annotation: type IV pilus assembly protein PilM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 TIGR01175: type IV pilus assembly protein PilM" amino acids 12 to 354 (343 residues), 413.9 bits, see alignment E=2.4e-128 PF11104: PilM_2" amino acids 15 to 354 (340 residues), 444.3 bits, see alignment E=3.9e-137 PF14450: FtsA" amino acids 197 to 322 (126 residues), 44.4 bits, see alignment E=3.1e-15

Best Hits

KEGG orthology group: K02662, type IV pilus assembly protein PilM (inferred from 98% identity to kko:Kkor_2245)

Predicted SEED Role

"Type IV pilus biogenesis protein PilM" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>B158DRAFT_0758 type IV pilus assembly protein PilM (Kangiella aquimarina DSM 16071)
MVLGLFKKKQVPVIGIDISSTAVKVLQLGKVGNRYRVDRYAVEPLPQGVVVERDIRDTEA
VGNAIKKAVDKARTTTKYAAVAVSGSAVITRSIQMEKGLTDQEMEDVIKVEADQYIPYPL
EEVNLDFEVLGDSDVNDNQVDVLLAASRSVNVDSRVDALEIAGLIPKVVDIEAYAIERAY
QLTKKKTVEHIENSVVAIVDIGATMTSLNVLRNGQVIYNREQLFGGNQLTEEIQSRYGLS
YQEAGLAKKQGSLPDDYETEVLIPFAEIITQQVGRALQFFFSASEFNSVNEIILAGGCSS
IDGLDGMIQEHLGTPTRVANPFAEMSISSHVNTQALSADAPAMMISCGLALRSFD