Protein Info for B158DRAFT_0732 in Kangiella aquimarina DSM 16071

Annotation: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 11 to 462 (452 residues), 359.2 bits, see alignment E=1.7e-111 PF02321: OEP" amino acids 66 to 252 (187 residues), 94.6 bits, see alignment E=3.4e-31 amino acids 280 to 460 (181 residues), 117.2 bits, see alignment E=4e-38

Best Hits

KEGG orthology group: None (inferred from 93% identity to kko:Kkor_2272)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>B158DRAFT_0732 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family (Kangiella aquimarina DSM 16071)
MMIKRSLTPLAALFVLSGCLSMAPDNERPELPVADNLSISEQQSQAAEQVVLREWQSFFT
DDNAKALINQALEHNRDLRIATARVAEVKGRYQIQWEEFVPGFRGEVSQTRGRDLSTFTG
GSVMFNRYDASVGLVSYELDLFGRIRSLSDAALNQFYATEQAQRFVKISVIAETANAYYS
WLSAKENLNLAQQTFDSRQESLDLIQKRKDNGIASDLDLAQAQAALAQVSARKSQLERLY
AVSKTNLELLIGTPLSQVSLSDKHQMPEMMSLELPDNISSNVLLNRPDVLAAEHQLYAAN
GNIGAARAAYFPSLRLTGDFGFASTEFDNLFDGDSETWTFMPSISVPIFGNALNAQLDVA
KAQKEQMVASYEQTIQQAFAEVYQLMVNRKSYEDELNANLDLVKAQKRRLYLAEAKYKAG
LASYLEVLSAQQDLFAAEQAKLESERARLANTVTLYKALGGGDSAYQ