Protein Info for B158DRAFT_0693 in Kangiella aquimarina DSM 16071

Annotation: general secretion pathway protein H

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details TIGR01708: type II secretion system protein H" amino acids 20 to 99 (80 residues), 48.3 bits, see alignment E=9.2e-17 PF07963: N_methyl" amino acids 20 to 42 (23 residues), 26.5 bits, see alignment (E = 3.5e-10) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 20 to 43 (24 residues), 28.1 bits, see alignment (E = 1.3e-10) PF12019: GspH" amino acids 58 to 187 (130 residues), 24.6 bits, see alignment E=3.1e-09

Best Hits

KEGG orthology group: K02457, general secretion pathway protein H (inferred from 76% identity to kko:Kkor_2312)

Predicted SEED Role

"General secretion pathway protein H"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>B158DRAFT_0693 general secretion pathway protein H (Kangiella aquimarina DSM 16071)
MKPISTATISKTKLHRSIIQAGFTLLEILIALAIASIMLSVAVIAFSDNDAAKLKNKAHQ
LYGLMQIAQEESILRGVEIGIRVKQDGYSFLIYDGTRWNPLQEHTLLRDVELEEPIEMYV
NVEGQEALLANSEADDESVEEQDGDQDANKEIKPPQIFMLSSGEMNEFTVTIGLDRDEPK
FYRITGNYLGEINFEPAMEGHYRHDWDLELNEPF