Protein Info for B158DRAFT_0672 in Kangiella aquimarina DSM 16071

Annotation: Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00578: AhpC-TSA" amino acids 49 to 171 (123 residues), 30.1 bits, see alignment E=4.1e-11 PF02630: SCO1-SenC" amino acids 49 to 183 (135 residues), 127.9 bits, see alignment E=2.6e-41

Best Hits

KEGG orthology group: K07152, (no description) (inferred from 91% identity to kko:Kkor_2331)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (216 amino acids)

>B158DRAFT_0672 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems (Kangiella aquimarina DSM 16071)
MQKNTAFTRLIFILVAILSLVAGVMSYQFLFAPKEMQLIRTFGEPRAIAPFEGKTHTGET
FNQENFIGNWSIVFFGFTTCPDVCPTAMSNINQVMQQLPENIAKSTQVVMVSVDPERDTL
ERLNKYVPAFNKDFIGINAGLEETRKLTESIGVTFYKIPGHDDPDNYLVEHTARWFIIDP
LGRRYALLTPDEVLPGEDLVGTVARDYEILREQSEF