Protein Info for B158DRAFT_0606 in Kangiella aquimarina DSM 16071

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF20772: TACO1_YebC_N" amino acids 4 to 74 (71 residues), 79.9 bits, see alignment E=1.6e-26 PF01709: Transcrip_reg" amino acids 82 to 236 (155 residues), 155.6 bits, see alignment E=9.5e-50

Best Hits

Swiss-Prot: 76% identical to Y1551_SACD2: Probable transcriptional regulatory protein Sde_1551 (Sde_1551) from Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)

KEGG orthology group: None (inferred from 95% identity to kko:Kkor_2399)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>B158DRAFT_0606 Uncharacterized conserved protein (Kangiella aquimarina DSM 16071)
MGRAFQNRKESMAKTSDQNAKVYSKYSREIYVCAKQGGVEPESNLALRSLMDRAKRDQVP
AHVIQKALDKAQGGAGEDFAVARYEGYAPGNVMVIVDCLTDNPNRTFGEVRQCFVKTKSK
IGTEGSVMHMFDHSAIFVFKSDDEEGALEALMMADVDVTDIEHEEGKITVFAPQTDYFKA
KQALQEHFGDIEFEVDEIQFVPKVMTQISGEDLEMFEKFLDMANDQDDVQNIYHNAEF