Protein Info for B158DRAFT_0578 in Kangiella aquimarina DSM 16071

Annotation: translation factor SUA5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 13 to 198 (186 residues), 180.3 bits, see alignment E=1.3e-57 PF01300: Sua5_yciO_yrdC" amino acids 19 to 195 (177 residues), 195 bits, see alignment E=7.7e-62 PF03481: Sua5_C" amino acids 214 to 321 (108 residues), 64.9 bits, see alignment E=1.1e-21

Best Hits

KEGG orthology group: K07566, putative translation factor (inferred from 40% identity to nmu:Nmul_A0607)

Predicted SEED Role

"TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>B158DRAFT_0578 translation factor SUA5 (Kangiella aquimarina DSM 16071)
MKTLRLDANKPADVQLAGELLQAGELVAVPTETVYGLAADASNPEAVAKIFKAKGRPTDH
PLITHIGSFEQLANWAADIPEWVESLTQCFWPGPLTLIFERHPNAPDVITGGLQTIGIRM
PAHPVLLELLRNFNMAIAAPSANPYQKLSPTSAEQVMACMDGKIAAVLDGGNCMVGTEST
ILKVSQNRAQILRSGPISEIDLAPHLTVPVVTPEKHQYSVSGNKKRHYQPDARIMLLSAQ
EIATRAIPKNSKVGVMAYSPELKTIKCHHLSLMPNDHQSYRKRLFAALYEMDCKGCNELW
IEAPPTGLSWLDIWDRLTRAAQK