Protein Info for B158DRAFT_0558 in Kangiella aquimarina DSM 16071

Annotation: sortase, marine proteobacterial type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR03784: sortase, marine proteobacterial type" amino acids 15 to 186 (172 residues), 217.4 bits, see alignment E=1e-68 TIGR01076: sortase" amino acids 66 to 188 (123 residues), 56.9 bits, see alignment E=2e-19 PF04203: Sortase" amino acids 67 to 189 (123 residues), 87.2 bits, see alignment E=3.9e-29

Best Hits

KEGG orthology group: K07284, sortase A (inferred from 88% identity to kko:Kkor_2416)

Predicted SEED Role

"LPXTG-site transpeptidase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>B158DRAFT_0558 sortase, marine proteobacterial type (Kangiella aquimarina DSM 16071)
MKTFIRKYGVLCALLAISLTAFGQAGYIKAKAILAQYLLEDAWQQTLDDGQPHKPWDWAD
TFPVAKLTVPSQNIEQLVLSGASGRNLAFGPGHLLSSNLPEQPGHTILGGHRDTHFEFLQ
YLKAGDELVIQDKLGVTHHYKVTQIEIHNIETDQIQDRGINQLTLVTCYPFNTLEVGGPL
RYLVHAEKV