Protein Info for B158DRAFT_0553 in Kangiella aquimarina DSM 16071

Annotation: 16S RNA G1207 methylase RsmC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF06080: DUF938" amino acids 2 to 195 (194 residues), 230.1 bits, see alignment E=3.5e-72 PF13649: Methyltransf_25" amino acids 29 to 126 (98 residues), 32 bits, see alignment E=2.4e-11 PF08241: Methyltransf_11" amino acids 30 to 130 (101 residues), 27 bits, see alignment E=8.4e-10

Best Hits

Swiss-Prot: 40% identical to MTL26_DANRE: Methyltransferase-like 26 (mettl26) from Danio rerio

KEGG orthology group: None (inferred from 87% identity to kko:Kkor_2448)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>B158DRAFT_0553 16S RNA G1207 methylase RsmC (Kangiella aquimarina DSM 16071)
MRQFSEACERNKGPILDVIKPYLDHSKEVLEIGSGTGQHAVWFAGAMPHLIWHTSDLRDN
HPSIIAWIESSELPNLRKPRTLNVGQGVWPVNQVDAIFTANTCHIMSWERVRDMFEGANR
VLKPGGHLLIYGPFNVNGEYTSESNKEFDASLKHRDPESGIRDYDDMNRVARHNGFSLIK
RHDMPANNMLLAYEKSSAF