Protein Info for B158DRAFT_0493 in Kangiella aquimarina DSM 16071

Annotation: Predicted small integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 162 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 61 to 83 (23 residues), see Phobius details amino acids 104 to 128 (25 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details PF09933: DUF2165" amino acids 4 to 157 (154 residues), 98.1 bits, see alignment E=2.8e-32

Best Hits

KEGG orthology group: None (inferred from 90% identity to kko:Kkor_2510)

Predicted SEED Role

"Conserved putative membrane protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (162 amino acids)

>B158DRAFT_0493 Predicted small integral membrane protein (Kangiella aquimarina DSM 16071)
MTIRHFKVIFVLLLALMCLIYAFQNIANIDACYQAIAYVLSMQEHAVYPDSFMPSIESSF
LVWFVVILIITTEIIAGLVLLKGAWDLWTSRLAEAMAFNHAKKYALIGAGIGIIVWFGYF
AVFGGALMQMWQTQAGSMSLTGAFQYFASCVFIWLIVNSNDV