Protein Info for B158DRAFT_0097 in Kangiella aquimarina DSM 16071

Annotation: metalloprotein, YbeY/UPF0054 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF02130: YbeY" amino acids 42 to 158 (117 residues), 118.5 bits, see alignment E=9.4e-39 TIGR00043: rRNA maturation RNase YbeY" amino acids 51 to 159 (109 residues), 116.5 bits, see alignment E=3.1e-38

Best Hits

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 77% identity to kko:Kkor_0317)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>B158DRAFT_0097 metalloprotein, YbeY/UPF0054 family (Kangiella aquimarina DSM 16071)
MNHPLFNLELQVACKASNLPDATDFEQWLAIAFAIESETKGRAKALAKPFDITVRIVEPA
ESQALNNDYRGKNKPTNVLSFPFEMPEGIEGLEVSILGDLAICAEVVEKEAAEQKKTLGS
HWAHMVVHGGLHLLGYDHIKEFEAQEMEALEVDILAQLGVEDPYQVRD