Protein Info for B158DRAFT_0078 in Kangiella aquimarina DSM 16071
Annotation: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 40% identical to DAAA_BACSU: D-alanine aminotransferase (dat) from Bacillus subtilis (strain 168)
KEGG orthology group: K00824, D-alanine transaminase [EC: 2.6.1.21] (inferred from 88% identity to kko:Kkor_0334)Predicted SEED Role
"D-alanine aminotransferase (EC 2.6.1.21)" in subsystem Pyruvate Alanine Serine Interconversions (EC 2.6.1.21)
MetaCyc Pathways
- D-alanine degradation (1/1 steps found)
KEGG Metabolic Maps
- Arginine and proline metabolism
- D-Alanine metabolism
- D-Arginine and D-ornithine metabolism
- Lysine degradation
- Phenylalanine metabolism
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.6.1.21
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (299 amino acids)
>B158DRAFT_0078 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase (Kangiella aquimarina DSM 16071) MSIAYLNGQLLAIEEAKVPALDRGFLFGDGVYEVIPVYAGRLFRFKQHIARLENSLRGIR LPMEQTLQDWANICHQLIEQNSLNNASIYLQITRGAYPERNHDFPANPNPTIFAMITALP EVQAVPSDKDLQGISVITAEDIRWQRCDIKAITLLANCMLKQQALECGANDTILVRGGVA FEATSSNLFIVRDGVIITPPLSEHLLPGITRDFLLWLAEQHGILTEQRLIPEHELLQADE IWLTSSTKEIRPVTRLNDVTIGDGTAGPVWRQMYDHYQQLKVQLYRGEIDSNTEGEIAL