Protein Info for Atu8167 in Agrobacterium fabrum C58

Annotation: putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1127 transmembrane" amino acids 48 to 67 (20 residues), see Phobius details PF13116: DUF3971" amino acids 457 to 740 (284 residues), 41.2 bits, see alignment E=8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu8167)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8U573 at UniProt or InterPro

Protein Sequence (1127 amino acids)

>Atu8167 putative transmembrane protein (Agrobacterium fabrum C58)
MAEIRGEKVSFGKRDMVALHELPSAQAEDPIIVHCPPPRSMARAFCKIFAALFVLAFLSI
GGIIVSVETGSIDKTLSSQAQQALEKALGPHYSARIGSSAIRFSTGLRLALVAEDVDIVE
KESGQHLSRARAIGMALDPLALLAGHVSVQSLEADGMELDTALLPKGNGFDLASIKLDAV
PQQLQAAFGQLDKLAQAFLSSGTEEIDISSVSVHLPPSDQGKPRTIEVRELSLTPDQQGG
YTLDGETLFNGEIASVSLRTSGAGGVIDGFDARIDGFDIGPFLEKFDPDGNLHEGLNVKT
GVNIVARRAMVAQEPRLEVSVGLGNGTLMIGGEAQPFTTGTVHARYDFAKNSVVIDNSRL
ELGRTIIPVNGEISDTEEGFGLSLRVDNGVASSEASGEAPVSFNLKADGHFATATKQLDV
PSLYVSGPLGDMAGSLKIRFGEGSPEISFGGQIPKMEATAVKQLWPFWMAHKPRDWVVSN
LYGGTVTNGSIAIFIPQGRMCGPGCPLVLGESEMQIRFDIDETRLNTTGDIPPLRDVDAH
FDLVGGKMAVDIKEGTTYFPSNRTLSLENSRFLISDVYEKPLLGNLDLNVSGAADAVAEL
ATLKPINALKDTQFKPEDFTGDVKANAKLTVGMLSSQNPPPPVWTADLDLKNLALTKPFA
GHKVTALDGFMSLNDHQLKLEGKGRVDDVPMDIVMTEPVRKNSNVAPTLSLKATLNETQV
AKLAPELSTVLGGTTAIEIDGADPKSQDIKLDLTKASIILPGLGWSKGIGIPASAAFTIQ
VADGRTTVSDFSLDGDGFGAAGDITFSKNGLISADLSRVKLSPADNYAVSVAASKNGYIV
NASGKSADLRPFISKLRSPSSGGDGASRSQPTLSVKAQFDKVYGFNDEVLANVNADVSVR
DGKVRSIDVRGVTGNGQAVVAQTVNRGATGTVTLTSSDAGSLARFANIYSRIRGGLLNLA
LTTSNGSDWSGSLDLRNFAVVNEAKLQDIVATPTGEDGRSLNNAVRRNIDVSSEKFQRGF
ARVVYVNGSVAVENGVVRGEQIGATFQGLLKDQSGRMEMTGTFMPAYGLNRLFGELPFIG
IFLGNGRDRGLLGITFKLSGQTDQPKLTINPLSLIAPGVFRQIFEFQ