Protein Info for Atu6131 in Agrobacterium fabrum C58

Annotation: TraR Antiactivator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF09228: Prok-TraM" amino acids 1 to 98 (98 residues), 120.9 bits, see alignment E=1.4e-39

Best Hits

Swiss-Prot: 100% identical to TRAM_AGRFC: Transcriptional repressor TraM (traM) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 100% identity to atu:Atu6131)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q44452 at UniProt or InterPro

Protein Sequence (102 amino acids)

>Atu6131 TraR Antiactivator (Agrobacterium fabrum C58)
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKS
GKEVGGPQHLCYIEASIEMHAQMSAVSTLISILGYIPNATVN