Protein Info for Atu6101 in Agrobacterium fabrum C58

Annotation: helicase, SNF2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1693 PF28553: WH_1" amino acids 615 to 666 (52 residues), 64.9 bits, see alignment (E = 7.2e-22) PF28554: DUF8437" amino acids 716 to 846 (131 residues), 145 bits, see alignment 2.1e-46 PF28555: Helicase_dom" amino acids 877 to 1177 (301 residues), 171.6 bits, see alignment E=3.7e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6101)

Predicted SEED Role

"FIG00986851: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKW2 at UniProt or InterPro

Protein Sequence (1693 amino acids)

>Atu6101 helicase, SNF2 family (Agrobacterium fabrum C58)
MSHDDPFTIDLFGNTALSSGLGLGVMAFASNFGPDDDPDPTTPAPALPIAAVVRPSCPPC
RARGLNFHLADDRGLARRWKDRARANIAAIRLAAEIEAGQRFATREEQETLIRFTGFGAS
DLANGVFRRPGELEFRKGWDEIGSDLEDAVCETDYASLARCTQYAHFTPEFIVRAIWSAL
QRLGWRGGRVLAPGIGTGLFPALMPEALRDLSHVTGVELDPVTARIVRLLQPRARILTGD
FARTELPASFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYFVARSIDLLKPGAFAAFVTS
SGTMDKADSSAREHIAKTADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAELEGDLS
WLDIEEVRPATADEGAIRVNRWFAQHPDFVLGTHALTSGPFGETYTCLAPDGEDLDAALS
AAVHLFPEGRYDGEPTQIDLDLEDATDDSPRDLPAGRHVREGSFFVDNARGLMQVIDGEP
VAVKVRKGRNADGIPEKHVRIIRKLISVRDAVRVVLKAQELDQPWKDLQVRLRIAWSSFV
RDFGPINHTTVSITEDPETGKTRESHRRPNLQPFADDPDCWLVASIEDYDLENDTARPGP
IFTDRVISPPAPPVITSAADALAVVLNERGHVDRDHIAELLHRDPEDVVTELGSAIFRDP
ADGSWQMADAYLSGHVREKLKVADAAAGLDPAYERNVSALTAVQPVDLRPSDITARLGAP
WIPAGDVVAFVKEMMGTDIRIHHMPELASWTVEARQLSYLAAGTSEWGTDRRHAGELLSD
ALNSRVPQIFDTIRDGDSEKRVLNVVDTEAAKEKLHKIKQAFQRWIWSDPDRTDRLARVY
NDRFNNIAPRKFNGDHLKLPGASGAFVLYGHQKRGIWRIISAGSTYLAHAVGAGKTMTMA
ASIMEQRRLGLVAKAMQVVPGHCLAQAAREFLALYPTARILVADETNFSKDKRARFLSRA
ATATWDAIIITHSAFRFIGVPAAFEQQMIHDELELYETLLLKVEDEDRVSRKRLERLKEG
LQERLEALSTRKDDLLTIAEIGVDQIIVDEAQEFRKLSFATNMSTLKGVDPNGSQRAWDL
YVKSRFIETINPGRALVLASGTPITNTLGEMFSVQRLMGHPALMERGLHEFDAWASTFGD
TTTELELQPSRKYKPVSRFASFVNVPELIAMFRSFADVVMPADLREYVKVPAISTGRRQI
VTSKPTQAFKHYQMVLAERIKAIEEREGPPQPGDDILLSVITDGRHAAIDLRLVDADNDN
EADNKLNNLISNAFNIWKATEGSTYLRHDGKSFELTGAAQMIFSDLGTISVEKTRGFSAY
RWIRDELIRLGVPASQIAFMQDFKKSEAKQRLFGDVRAGSVRFLIGSSETMGTGVNAQLR
LKALHHLDVPWLPSQIEQREGRIVRQGNQHDEVDIFAYATEGSLDATMWQNNERKARFIA
AALSGDTSIRRLEDLGEGQANQFAMAKAIASGDQRLMQKAGLEADIARLERLRAAHLDDQ
HAVRRQIRDAERYVESATRRIAEIGQDIERLVPTSGDAFSMTVMGKVYAERKEAGRALMK
EILTQVQLQRQGEKVIASIGGFDLKYGGERFGRDGYRYTTMLMRTGADFEIDLAVTVTPL
GAVSRLEHALGDFEGERERNRQRLADARRRLASYQSRDEGRDFAFAGELAEKLRQLAEVD
AALATDVDERIAA