Protein Info for Atu6075 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (peptide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 106 to 131 (26 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details amino acids 270 to 294 (25 residues), see Phobius details PF12911: OppC_N" amino acids 30 to 68 (39 residues), 35.7 bits, see alignment 6.2e-13 PF00528: BPD_transp_1" amino acids 121 to 304 (184 residues), 100.7 bits, see alignment E=8.3e-33

Best Hits

Swiss-Prot: 40% identical to DPPC_ECOL6: Dipeptide transport system permease protein DppC (dppC) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu6075)

MetaCyc: 40% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D2K9 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Atu6075 ABC transporter, membrane spanning protein (peptide) (Agrobacterium fabrum C58)
MSGFDIESSTARMAAGEAPWSNIGNPVIARSVLRDFLSNPGATAGLMTLSIIMLLALLAP
WLAPGDPQSIVGPERLWPGENPDFLLGTDSLGRSVWAGLVHGARVSLLVGISATILGLVF
GGLIGAIAGYCGGWIDDLIVRFIEIFQTIPSFVLLVVLVAFATPTIGTVIVGIALVSWAM
IARLTRAEFRSIREKDFVMAARASGISAPRIILQEILPNALPSLIVVSSIMVASAILMES
ALSFMGLSDPNTVTWGSMIGASREVIRSHWYLTLMPGGCIVLTVLALNLIGDGLNDALNP
RIRRKVRSRKAVE