Protein Info for Atu6068 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (ribose)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 110 (19 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 69 to 330 (262 residues), 114.6 bits, see alignment E=2.3e-37

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu6068)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z2PKF0 at UniProt or InterPro

Protein Sequence (344 amino acids)

>Atu6068 ABC transporter, membrane spanning protein (ribose) (Agrobacterium fabrum C58)
MIPKQISEIEVPQATGKIETWKARVATAIVSREHRATWLPASALLILIGYFAFQQPAFLS
PLNLTVMGAQAGPLLLISLGATFIVLMGSIDLSVAAVAALASAISAVLLQKFGTGYTTAL
LAVLGFGIAAGLLNSVLSTVLRLPSFIATLASSSIFTGIMLHVLDGTALFVNDDDFSMLA
NGQIIPRVPNVLLLSLLLWLVLSLTTSHTRFGRYIVAIGAGERVAKLSGIAINRYKTYAF
VLSSTLAAIGGFFLLSRLGSATPSIGDGYLLDTVAAIVVGGTALTGGVGGAQRTLLGVAL
ITILSNGLNVSGVSTFTQEIVKGVVIVIAVLTTIDRVSLQDIVK