Protein Info for Atu6065 in Agrobacterium fabrum C58

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 54 to 70 (17 residues), see Phobius details TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 25 to 202 (178 residues), 238.4 bits, see alignment E=4.5e-75 PF02627: CMD" amino acids 67 to 148 (82 residues), 40.4 bits, see alignment E=1.2e-14 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 84 to 128 (45 residues), 34.7 bits, see alignment 9.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ara:Arad_14218)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKY7 at UniProt or InterPro

Protein Sequence (207 amino acids)

>Atu6065 conserved hypothetical protein (Agrobacterium fabrum C58)
MSQATARHSVTSSPVSTGQLEEPISRLRVPTEDELPQKLRDIHMRIRKKFGFVPNFLTAL
SANPGTALRIMAFYEHLFDQSNSHLSASERELIAVVTSVATGCSYCVFNHRPALAAALGD
RVLADRIARNHNDVTLAPRERALADLAQKLAATPHSVGSDDFARLRAIGFSEPAILEVLE
VSAFFSYGNRLTIALNVLPDPQFFVSA