Protein Info for Atu6048 in Agrobacterium fabrum C58

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 836 PF04851: ResIII" amino acids 36 to 168 (133 residues), 39.8 bits, see alignment E=4.7e-14 PF00270: DEAD" amino acids 39 to 171 (133 residues), 51 bits, see alignment E=1.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6048)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z2PJQ2 at UniProt or InterPro

Protein Sequence (836 amino acids)

>Atu6048 conserved hypothetical protein (Agrobacterium fabrum C58)
MVDFKKLREDKAKPKPVAPRDIFHSLPKAVGINDLYVSQAEALDAWYPSRRNDKDVVVKL
HTGGGKTLVALLMAQSTMNELGEPVLYLAPTTQLVEQVIAKATEYGIRAVPYTRGQPLAS
EFLDGNAVLVGAYESLFSGRSKFGVRGSAKPAVKVGGIILDDAHVALSSVRKAFSLTITS
KDHLEVYQEMADRFRGAFDEVGRGGAFADITRGKDFGVIEVPSWAWLSKVPEVREFLSQH
VEGVDPYIWPLLRDNLAMCHCLFSRKSVTITPTFPPVDLLPTFDDAKRRIYMSATISDDS
EIVRTFGASPAAVGRPIQSSSLAGVGERMILVPELMPLGNVAITPMVKQIAKWIAGYAGV
AILAPSGTVAKGWLDTAEYPETSEAVSHRIKDMQAGSFKGPIVLANRYDGIDLAGQSCRL
LIMDGLPQGTTDYDMFRTNVLADSAVNSLLAQRIEQGLGRGSRGGGDFCVVVLTGSDLVA
WIGRKKNLEHLTASSRVQLNVGQEVSEAVASYQEIGETMLKCLNRDPDWVAYHASELAAA
TRPPGIDELSLKVAGAERRAFRLERVGQYESAIQELEHLISSPDLVQDGQRRAWLSSLAA
RIAFHMNDDHKGQRLQTSAFATNNNHIPPRIRPAYIPRPMAGPQSMAIVSRILEYQRRGS
LIPAYNEAVSALVPDASPFQYEEALKNLGAYLGFDAERPEAVHKTGPDVLWRTSGLFDFV
IEAKSDKEKDNPLYKNDHAQLLEAEQWFRRCYPGRQSLRVSALPEPIADRKASTQGTYAL
KLEEVTKLVGAVRNLYVYLIGQPGDRDVLQERCEAELRRTGLTPDGIKTIYLTEFK