Protein Info for Atu6046 in Agrobacterium fabrum C58

Annotation: DNA invertase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF00239: Resolvase" amino acids 74 to 207 (134 residues), 144.4 bits, see alignment E=1.4e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6046)

Predicted SEED Role

"Phage DNA invertase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D2N7 at UniProt or InterPro

Protein Sequence (370 amino acids)

>Atu6046 DNA invertase (Agrobacterium fabrum C58)
MYRISADGRDIDENHCFPATCDVFTLTPKDQETFTNDRLSLSSAFGKLPFNTPQALQMAR
NTQNQRSGRPQGRIIGYARVSTDEQATDAQEIELRSAGCDIIVQEHGSGAARARPALSKL
LREISAGDTLVVVRLDRLARSVSHLLEVIEDMTAKGAHFRSLRDPIDTSTPQGMFSLQVL
GAVAQLERALISERTKAGIRAAKSKGKLSGNPGIREKRPEALARMTAAQKAAYGDRIQAS
ANQWLPTVRRMRPDHTWDDIARMLKQRGLDWTPERLRRAVKWMVTERLVDAALLKKSPPR
LPEDRLMTLVAGIHSSNPDLKLREIAGQLERLHERTPRGGSKWAPSSVKNLIDRARRSGL
ITDVDIAAAE