Protein Info for Atu5541 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 649 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details amino acids 356 to 373 (18 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details amino acids 460 to 484 (25 residues), see Phobius details PF04632: FUSC" amino acids 1 to 614 (614 residues), 468.9 bits, see alignment E=5e-144 PF13515: FUSC_2" amino acids 2 to 132 (131 residues), 46 bits, see alignment E=8.8e-16 PF11744: ALMT" amino acids 17 to 185 (169 residues), 22.2 bits, see alignment E=9.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5541)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D2T7 at UniProt or InterPro

Protein Sequence (649 amino acids)

>Atu5541 hypothetical protein (Agrobacterium fabrum C58)
MLAYLIAISFDLDRPYWAVATVYIVAHPLSGAISSKSVFRLLGTLVGSFATLIMVPNLVN
EPILLSGAIVLWVAACTFISLLDRTPRSYVSLLAGYTVLLAGLPLVSAPANTFDTVVSRV
EEIGLAIICASVVSHIVFPVHVGAVLISRIDGWMDRARTLLEATAAGKLSETQSRVERHA
LAADAADLRSFNLHLQYDGSRYRWAVSLVRSMQYRMAAFLPLLSEMEDLRRSLGKLNTSG
ATQALAIITDAASHTRGSAEILDSRIDALTSATTRHTWEKLLLANAARTVRNILRLADEC
RALLKSMEGENNARVVRVPHRRRAQHRDIGMALLSSLTVAVCLATSIFFWIESGWADGMT
FTQISGVLCCLLATMDDPVPAMRKFVGVTMCSVMAAFVYNFTIFPVIDGFVPLIAALGLF
LVPAGICLAVPSLAIVGMGLCINFPLLLTLQAYPRADFVTFSNAAVATILAMVWTITVCG
IFRSVRAETNARRFFSVTRKHVANIAAGKYSNAHVTYDRMTDIAGLFASRAAKVPTTSDI
WDGDLLRDLRAGLHLTAMLERIETVSGGLQVLAKPIFPTIRTLYQQPRAGRGERLKNAVR
ALDDLILSAEARTAVDIELLSHAVALRVCIAPDADAPTLKTPSPNRRAA