Protein Info for Atu5531 in Agrobacterium fabrum C58

Annotation: ABC transporter substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13433: Peripla_BP_5" amino acids 34 to 396 (363 residues), 478 bits, see alignment E=2.9e-147 PF13458: Peripla_BP_6" amino acids 34 to 375 (342 residues), 280.7 bits, see alignment E=3.9e-87 PF01094: ANF_receptor" amino acids 55 to 265 (211 residues), 27.1 bits, see alignment E=3.2e-10

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 100% identity to atu:Atu5531)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D2U6 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Atu5531 ABC transporter substrate binding protein (Agrobacterium fabrum C58)
MVFNRREFLKTAATASAALALPALGGRAFAADAIKVGALYSQTGGLSVAEKLLANGVMMA
VAEINAAGGVLGRQVEVVVEDGASDPKTFSEKASKLILKDKISTVFGCHTSASRKAVLPI
FERRGAMLFYQTHYEGFECSRNVVYSGAVPNQQLSNYIPWIVEKLGKKKFFIVGSNYVYP
REMAKVSKKLIEAAGAEWVADEYLELGHSEWAVMVSKIKESGADVVLSNVVGDSIIAFYR
EFKNQGLSQEDIPICATVTSEIEIAAMGAEYAAGSYTSFPYFMSIETPENKSFIERFRTF
VNDPKAVTYHSLEAAYFQVFLWKQAVEKSGDLSADAIRAGIRGQTYDAPGGKVTTDPDNL
HCWLTPRIGQWQPDGQSKVVNAYPAPIKPLPYSAYGETESNLFCTTNGLDAAKLKG