Protein Info for Atu5524 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (branched chain amino acid)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 228 to 252 (25 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 13 to 284 (272 residues), 91.4 bits, see alignment E=2.8e-30

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu5524)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL29 at UniProt or InterPro

Protein Sequence (298 amino acids)

>Atu5524 ABC transporter membrane spanning protein (branched chain amino acid) (Agrobacterium fabrum C58)
MAEFDWLFFIEVLIGGLLSGVMYSLVAIGFVLIYKTSGVLNFSQGALLLFAALTFVSLVE
RGVPFAPAFAITFAIMVVIGIAIERVVLRPLTNKPPITLFMATLGLSYIIEGAAQLLWGT
QVHGLDLGIEDIPFDVGGVFISQFDIFAALVAAGMVAALSAFFRYTRIGLGFRAVADDQF
AALAVGLRLPWIWASVWAAAGLVALVAGLLWGARVGVQFSLSLVVLKALPVLVLGGFDSI
LGAIIGGLLVGASEKLAEVYIGEYFGGGIEGWFAYVVALAFLLIRPSGLFGQKFVERV