Protein Info for Atu5523 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (branched chain amino acid)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 256 to 291 (36 residues), see Phobius details amino acids 308 to 331 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 41 to 321 (281 residues), 122 bits, see alignment E=1.3e-39

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu5523)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL30 at UniProt or InterPro

Protein Sequence (364 amino acids)

>Atu5523 ABC transporter membrane spanning protein (branched chain amino acid) (Agrobacterium fabrum C58)
MSAIAADLSLPCSLPRRAGTVVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLL
TGYAGQVSLGSAAFMAVGAFAAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLR
GFYLAVSTLAAQFFVQWALTKFSWLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTV
TALTFLAYRLVSSQTGRNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAF
AYLRTVEPAGFNLDRSFQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVF
DSGVLDMTQRIVIGALIILFLILEPDGLVSLWDRLKSRIAAAIRRARTPRSPAPKAKGLP
TRKA