Protein Info for Atu5520 in Agrobacterium fabrum C58

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 25 to 414 (390 residues), 604.1 bits, see alignment E=5.2e-186 PF02771: Acyl-CoA_dh_N" amino acids 36 to 137 (102 residues), 48.2 bits, see alignment E=1.9e-16 PF08028: Acyl-CoA_dh_2" amino acids 258 to 390 (133 residues), 104 bits, see alignment E=1.2e-33 PF00441: Acyl-CoA_dh_1" amino acids 261 to 387 (127 residues), 40 bits, see alignment E=6.6e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5520)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D2V7 at UniProt or InterPro

Protein Sequence (415 amino acids)

>Atu5520 acyl-CoA dehydrogenase (Agrobacterium fabrum C58)
MTISNVNTKDAVEGVPAVPRPTERAHIIRSDAEAIEVAKIVAAEIAPGAALRDRDRIWPV
KELDAFSQSGLWSINVPKKFGGPEVSYATLAKVIEIVSAADSSIGQIAQNHLGVVAAIRT
VSDEAQQKLLFAEVLRGTRFGNAFSEFGSKRAADFETKFVDAGDHVIVNGQKFYSSGALL
AHLVPIVALDDEGRAWYAIAERDAPGLTVIDDWSSFGQRTTLSGTVILNNVKVPKTYLVP
GYKGYAEPTADGAIFQIIQVAVDTGIARAAIDETVSFVRTKSRAWVDSGVDHAWDDPYTI
QAVGDLTLRLHAAQALLEKAGYAIDRAIQNPNAETVAEAQVVTAEAKILATEIAIAATNK
LFELAGTRSTLAEHHLDRHWRNARTHTLHDPVRWKYSILGKYFLNGEKPPLHAWS