Protein Info for Atu5461 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 69 to 95 (27 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 263 (172 residues), 53.2 bits, see alignment E=1.6e-18

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu5461)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalG" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL60 at UniProt or InterPro

Protein Sequence (276 amino acids)

>Atu5461 ABC transporter membrane spanning protein (Agrobacterium fabrum C58)
MKRTFLQSLALYATVIFTLVMVLFPVYWLLVTALSTTDELYRLPPTFWPDDPQWDIFARV
WAAKPILLWLWNSMLAAIGSVALSMLVSVSAGYALSRYSMRGGATMGLFVLTAKMLPATL
LVIPLFSIFSSFGLIGSLWTLVLAHSTMIIPFATWMLKGYFDTIPKELEQAAMVDGCSPI
GAMVRVVLPIATPGLAATALYAFVLSWADYAYARTFLVNSPDNWTANLGITTMQGEYVTY
WNDISAASVFIALPIIAIYLFLERYLVGGLTAGAEK