Protein Info for Atu5460 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 81 to 110 (30 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 299 (200 residues), 84.6 bits, see alignment E=3.9e-28

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu5460)

Predicted SEED Role

"FIG01076152: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL61 at UniProt or InterPro

Protein Sequence (308 amino acids)

>Atu5460 ABC transporter membrane spanning protein (Agrobacterium fabrum C58)
MTEPVRAGRRKFFDLARPSRQHLLGYILIAPAVLMVAAIIVWPLVLAIDLSFQQVKIPRL
GGASRPFSLSNYTWLFSSPEFWLSCWVTLKLVVVVTAGSVAVGLSTALLANNRFKGRSVA
RLGMALPWAVPEIIAVVIFAWMFDTSFGLFGWLAIKLGFTDQMIPWVSSSTAAFWAVAIT
MVWKGFPFVSIMCLAGLQSIPADYYAAAKVDGASVWQRFRWITMPLLMPVLGVTLVLTLL
WVFRDFSIIKVLTGGGPLRSTQTLSIMTYDQAFQYHNFGRAAAVGVLTLVICIVASLLML
GRRSKSIY