Protein Info for Atu5385 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 233 to 251 (19 residues), see Phobius details PF13784: Fic_N" amino acids 44 to 125 (82 residues), 103.1 bits, see alignment E=9.9e-34 PF02661: Fic" amino acids 132 to 236 (105 residues), 65.1 bits, see alignment E=1.3e-21 PF13412: HTH_24" amino acids 320 to 361 (42 residues), 29.2 bits, see alignment 8.4e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5385)

Predicted SEED Role

"MloA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D380 at UniProt or InterPro

Protein Sequence (393 amino acids)

>Atu5385 hypothetical protein (Agrobacterium fabrum C58)
MSDSQSRNRLGRFVETVAASETVRAFVPPPLPPEPAIDVLSLLERLSLAERALGRLDGIT
MLLPRQELFLYMYVRKEAVLSSQIEGTQSTLSDLLRFETEAQAGQPVDDIREVSNYVDAM
MYGLQRLETLPMSLRLIREMHAKLLHSGRGGTKDPGEFRRSQNWIGGTRPGNALFVPPPV
TEMAGCLDAFERFMHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCMNG
VLRKPLLYLSLYLKSHRREYYRLLQEVREHGNWEAWLEFFLTGVADTANQAFEAATQIVD
LFKEDRERITMESDRAGSALRIHELFQQNPFHTANQIVQVTGLSAPTVNAALADLERLGI
VDEVTGRKRGRVFSYRRYLAILGEGTDPLPLNS