Protein Info for Atu5358 in Agrobacterium fabrum C58

Annotation: RhtB family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 195 to 212 (18 residues), see Phobius details PF01810: LysE" amino acids 20 to 209 (190 residues), 104.9 bits, see alignment E=1.9e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5358)

Predicted SEED Role

"RhtB family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3A0 at UniProt or InterPro

Protein Sequence (216 amino acids)

>Atu5358 RhtB family transporter (Agrobacterium fabrum C58)
MDLVIPGAANLGLFISTTLVLLLVPGPAVLYIFARSVEQGRSAGLVSILGIHTATLVHVV
AAAVGLSALLASSALAFSVVKYAGAAYLIWLGLKKLFGPSDIPDVEGGLPTRSRMRIFRE
GFIVNLLNPKTALFFLAFLPQFVEVDRGHVAMQIAFLGILYTAIGILTDGTYALVAGTAG
NWLKRSPVYLKAERWVSGFVYIGLGVTAAFAGNQRK