Protein Info for Atu5354 in Agrobacterium fabrum C58

Annotation: autotransporting virulence factor family member

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1192 TIGR01414: outer membrane autotransporter barrel domain" amino acids 730 to 1192 (463 residues), 407.7 bits, see alignment E=3.3e-126 PF18883: AC_1" amino acids 733 to 828 (96 residues), 63.3 bits, see alignment E=2.2e-21 PF03797: Autotransporter" amino acids 917 to 1166 (250 residues), 126.7 bits, see alignment E=1.4e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5354)

Predicted SEED Role

"Outer membrane autotransporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3A2 at UniProt or InterPro

Protein Sequence (1192 amino acids)

>Atu5354 autotransporting virulence factor family member (Agrobacterium fabrum C58)
MTVPAAFFEKRPSSGDGSFVDNSDTNRANNMLISGGRVGKCKGIVGGIAPCEAGLVLSFE
SLSVVSAAAFTSLLIWSSPSLAGSCDPAGPETWSCSGAATGSDPSAVIFSSAPVTVVTQP
GFGLSTSGEAIRVETIGGIAITDGNASSITSSGGQGILAINDVSGAVEITSNGSITGIDG
IYVINTGTGPTTITSSGTAIGTIGNGVYVSNDGFATDLTVSQTGGTIFGADNGISTTNRG
FGATAISVAGDVDGAAENGIWAQNFANATGITITQAVGSTITGYTHGIRADNWAAGAISI
TTAGVINQTQTGAANNDTFGVYAYNSTAGTDIILTQTAGSISGNWFGMYANNQGSGSTRI
ISSGDVTAIVRAGLYAYNAAPADSIFVSQTSGTVKGGTYGVFADNAGTGSTTVTLSGDVI
ASGDYGVYSRNASSATDLMVRQTAGSIAGRTGILASNRGTGASLVSVGSRVSGGAGAGIQ
TIAANGSTIDIASSATVTATSGIAIRDGGVAGSPIASDTIGGNVVVNSAGIVTGDAVLGL
GDDTFNLAGGTYAGNIYGDDRDDPRSNDGVTNHEGNDTFTWTGGTLAGGFYGQDGSDTAM
VSASAYDGSQVLDGGDDTSVADGMIDTLTLKGVTATTNGGKIINWEVVNLDGASLSIDDG
VWHVGEPDEATTGVFLDNRSRLDGIASLAFDGNMTIDSTSAFVGTGGGTGVYSFSGDVAN
AGTITTVDDAVGDVVIIGGNYNGNGGQILFDVALGDDNSKTDMVIINGDTSGMTNVGVNN
VGGTGAQTSEGIRIIEVNGASNGYFSLVGDYTIGDRQAVVAGAYAYQLYQGGTSSPNDGN
WYLRSQLTVSNPTPTAPLYQAGVPSYEAYPQALLGLNGVPTLQQRVGSRFWAGNGASVGT
PYATPEGAGVAIEGNGVWGRIEGVHNHIEPRFSAAAAEYDQNVFKLQAGIDGLLTETESG
KLIGGFTVHYAHGKTDTRSVWGDGEISTDGYGLGGTLTWYGENGFYLDGQAQMTWYTSGL
NSLLARTNLTDNNDGFGYTLSLESGTRIAIDPGWSVTPQAQLVYSNVDFDAFTDTFGARV
SLDRGESLQGRLGVTLDHESAWQNDKGLLNRSHVYGIGNLYYEFLEGTRVDVQGVRLASR
NDRVWAGLGLGGTYSWDDDKYSIYGEALVQTSLNDFGDSYSVKGQVGLRVKW