Protein Info for Atu5332 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 45 to 70 (26 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 354 to 379 (26 residues), see Phobius details amino acids 388 to 406 (19 residues), see Phobius details amino acids 410 to 426 (17 residues), see Phobius details amino acids 469 to 488 (20 residues), see Phobius details PF01970: TctA" amino acids 20 to 438 (419 residues), 540 bits, see alignment E=1.8e-166

Best Hits

Swiss-Prot: 61% identical to YZ2R_AGRVI: Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region from Agrobacterium vitis

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 100% identity to atu:Atu5332)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLC4 at UniProt or InterPro

Protein Sequence (502 amino acids)

>Atu5332 hypothetical protein (Agrobacterium fabrum C58)
MNFVDLLMLGFSEALTPTNLGFCLLGALLGTLIGVLPGIGPTATIAVLLPITFYLPPLAG
LIMLSGIYYGAQYGGSTTAILVNLPGEASSVVTAVDGYKMAQQGRAGSALAVAALGSFFA
GTVATFGIAIAGPTLSSFALSFGPAEYVSLMLFGLLAATILARGSVLKAIGMILLGLLLG
MVGIDASSGEERLTFNAVELFDGIDFVVIAIGLFGFSEIVENLENVEARGVLVSKLSRLW
PTREDFRRAWPAVLRGTGVGTFLGVLPGGGATLASFCAYSVEKKVSKRPNEFGEGAVEGV
AGPEAANNAGAQSSFIPLLTLGIPSNNMMAMMLSAFIIHGITPGPTVLATQPEIFWGLVA
SMWIGNLMLVVINLPLIGVWVKLLTVPYRLLYPAILLFCCVGVYSINNRIFDVALAAGFG
LLGYAFRKAKCEPGPLLLGFVLGPLLETNIRRALTISHGNPSVFVERPISLVLLIATTGV
LLLMILPSFRKTREEAFQEEEA