Protein Info for Atu5323 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 304 to 331 (28 residues), see Phobius details amino acids 343 to 361 (19 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 354 (333 residues), 53.2 bits, see alignment E=1.1e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5323)

Predicted SEED Role

"FIG00460211: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLD2 at UniProt or InterPro

Protein Sequence (417 amino acids)

>Atu5323 hypothetical protein (Agrobacterium fabrum C58)
MSERVPIAAIVALGVTQNIGYGTLYYSFSILAPDMATHFAWSTEWIFGALSIALLIGGLT
APWLGRLFDRISAGRVMTIGSAVAAASLVACAYAPGKASYVAALIVIEVSANLVQYGAAF
ALLVQLRPQVASRSITYLTLIAGFASTMFWPITTTLHAQMSWQNVYLVFAALNLLICLPV
HAWLSHAAIQRKANAKTAPSNVPGVLAPERRRLGFLLMVIGCSLMSLVGAALLVHLVPLL
SGLGLGATAALVSTLFGPSQVTSRLINMAFGKRVAALHLAVIAAVLIPAGVLILLLTAPS
TMGAMAFAVVFGMGNGLLSIVTGTLPLHLFGSAGYGQLQGKMMAARLILSALAPFALALS
IARLGIATSLVICTVLGISAVVTLLRIFPLVRSNDAPPPSSLPKPSGCEAIGPEEIR