Protein Info for Atu5314 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (iron)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details amino acids 265 to 294 (30 residues), see Phobius details amino acids 307 to 330 (24 residues), see Phobius details amino acids 337 to 354 (18 residues), see Phobius details PF01032: FecCD" amino acids 45 to 355 (311 residues), 306.1 bits, see alignment E=1.3e-95

Best Hits

Swiss-Prot: 48% identical to FEPD_ECOLI: Ferric enterobactin transport system permease protein FepD (fepD) from Escherichia coli (strain K12)

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 100% identity to atu:Atu5314)

MetaCyc: 48% identical to ferric enterobactin ABC transporter membrane subunit FebD (Escherichia coli K-12 substr. MG1655)
ABC-10-RXN [EC: 7.2.2.17]

Predicted SEED Role

"ABC-type Fe3+-siderophore transport system, permease component"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLD6 at UniProt or InterPro

Protein Sequence (361 amino acids)

>Atu5314 ABC transporter membrane spanning protein (iron) (Agrobacterium fabrum C58)
MTAQVVDQTCADPNGRPPAVNGPCGRAWQLRARLLVLVALSATVLMLLFIASLLTGARAI
APSTGFYALFAYDPASAEHIIIRDYRLPRTLLGLLCGAAFGVSGALIQAITRNPLADPGI
LGVNAGAAFFVTLAVGLLGFHAISSYLWFAFLGAVAVTLIVYSVGSRGRDGASPARLVLS
GVALSAVLGGIGSAITLLDPRTFDGLRVWSIGSLSGRNMDVVLTVAPFIIFGLVLSLCVA
PSLNAVALGDDPSRALGVNLVRTRILVVIAVTLLAGAATAAAGPIGFIGLMVPHVVRWLS
GPDQRRIIAFTILCSPILLLTADIAGRLVLFSGELEAGIVTAFIGAPVLIVLALRRRASG
L