Protein Info for Atu5162 in Agrobacterium fabrum C58
Annotation: type IV secretion protein AvhB1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: K03194, type IV secretion system protein VirB1 (inferred from 100% identity to atu:Atu5162)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q7D3S2 at UniProt or InterPro
Protein Sequence (228 amino acids)
>Atu5162 type IV secretion protein AvhB1 (Agrobacterium fabrum C58) MPVVFSDFCQTFEPFLASDAVPGVAGFKSQLSPLDIRSDSSAPLGRPETKPEVIKVATSF PVERREMHIGVEGIGPQELRRLNPSIPEAIELRLDQTSTGTQLDACFRVAVKVEAHPASG EQVPQSRRGRDDPSVGGVVNYGDQVRREIERLGPTVARFTIGDTGKGLQTNVSANSSQAD VVAEVVAENTPGEAHAISAASAWDVFKTRSRSSVLVFQDNQLELEQSE