Protein Info for Atu5134 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF07143: CrtC" amino acids 59 to 231 (173 residues), 210.9 bits, see alignment E=2e-66 PF17186: Lipocalin_9" amino acids 234 to 355 (122 residues), 140.6 bits, see alignment E=3.4e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5134)

Predicted SEED Role

"AttH component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3U4 at UniProt or InterPro

Protein Sequence (355 amino acids)

>Atu5134 hypothetical protein (Agrobacterium fabrum C58)
MNAKAILLLLCASCTSLPTPVMGQGFAGLGSNAEGFSIPTRGVELVFPKDHKPHPGFKIE
WWYVTANLQTADGQRMGVQWTLFRSALEPVERPGWSDPQIWIGHAAVTTASRHHVAERLA
RGGVGQAGVKGEPFDAWIDNWQMKAGTDDARDDLDQIDLNANGESFRYRLKLQAHGPLVR
QGDNGYSVKSAEGQASYYYSQPFYSVSGSVFLDGETHEVTGEAWLDREWSSQPLASSQTG
WDWFSLHLASGEKLMAFRLRDDKSGYISANWISADGRASPVDPDDVLLSPLRTADINGKS
VPVEWSVKIPSRGLDIKTKPLNEKAWMATSTPYWEGPIEFDGSTSGQGYLEMTGY