Protein Info for Atu5080 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (sugar)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 29 to 54 (26 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 113 to 300 (188 residues), 52.6 bits, see alignment E=2.5e-18

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu5080)

Predicted SEED Role

"sugar ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3Y8 at UniProt or InterPro

Protein Sequence (311 amino acids)

>Atu5080 ABC transporter membrane spanning protein (sugar) (Agrobacterium fabrum C58)
MSVQKLAPVRGAPNAPLRPLRKPRRDWMGLLYVAPALLLVLVFFLVPLGMTAWMSLHNWP
LIGMPRWIGFANYKVLWNDINFWNALAFTIRYTVAATVGLMLAGFGLALLIERPRPFANL
YRNAFFLPVVIGFASASLLWSWLSNVDSGLFSPLAETLGLTDGRVNLLATFAPSFWSVTA
MVIWKMAGFYMVILMSGLQAIPTDFIEAARIDGANALQRFRFITLPLVRRSFALALILCI
SGSMLAFDQFYIILAGGPQNKTITAVYWIFSQSFVSFRLGYGAALSMVLLAILVVLSIVQ
LRLLGDKEPTQ