Protein Info for Atu5062 in Agrobacterium fabrum C58

Annotation: ABC transporter nucleotide binding/ATPase (glycerol-3-phosphate)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF00005: ABC_tran" amino acids 20 to 162 (143 residues), 120.4 bits, see alignment E=1.4e-38 PF08402: TOBE_2" amino acids 260 to 331 (72 residues), 25.5 bits, see alignment E=1.7e-09

Best Hits

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 100% identity to atu:Atu5062)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.20

Use Curated BLAST to search for 3.6.3.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLR0 at UniProt or InterPro

Protein Sequence (347 amino acids)

>Atu5062 ABC transporter nucleotide binding/ATPase (glycerol-3-phosphate) (Agrobacterium fabrum C58)
MSGISLRDIRKTYVNGPQVLHGVSFDIQQGEFVVIVGPSGCGKSTLLRLIAGLDRCEDGT
IEIGGRLANDLAPQHRDIAMIFQNYALYPHMTVRENIAFGLELRGMKKSERNERAQCVAK
TLQLEAYLDRKPAALSGGQRQRVAMGRAMARNASIFLMDEPLSNLDNALRITMRTEIKEL
HRQLGATMVYVTHDQTEALSLADRIAVMKDGHLLQFDRPDVIYDRPANRFVASFLGSPPM
NFVPADLLPGWIGLQGLTAGLRPEILSVHAEKPHGTALMARLLLCEMTGADVLLHCETPA
GRLTVSAPRQDMPKDKGQFWIAFNLDRALFFDSRSGERVDLSPANQA