Protein Info for Atu4845 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 105 to 131 (27 residues), see Phobius details amino acids 139 to 165 (27 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 229 to 247 (19 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 48 to 321 (274 residues), 100.5 bits, see alignment E=4.7e-33

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu4845)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH80 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Atu4845 sugar ABC transporter permease (Agrobacterium fabrum C58)
MKNSFDMRRLFGNDSNIIQLLVITVIVFALMTWMNPGKFLNYYNFESISYIMPELGILSI
AMMIAMLTGGIDLSVVGIANLAGIIAGVYFHSTMVQAGQSSTSGVVFYTGLGIVLAMAVG
LLAGLINGLLVAKLRITPILATLGTGQVLMGLALVLTGGPAIVGFPDAWNWIGNGKILGI
ATPFLLFIGVCITVAILLTRSTLGINLMLIGTNPRAAVFAGIRKDRMMLYSYMLTGVLAS
LAGIILSGRTNAAKSDYGASYLLQAVLIAVLGGTNPAGGKGRVLGIAIALIALMLLSSGF
QMMRFSNHLIDFIWGAFLILVIAINAWRNPGR