Protein Info for Atu4844 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 299 to 318 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 34 to 312 (279 residues), 123.9 bits, see alignment E=3.4e-40

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu4844)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH79 at UniProt or InterPro

Protein Sequence (325 amino acids)

>Atu4844 sugar ABC transporter permease (Agrobacterium fabrum C58)
MKFLKSTEFIIACVLLAAMIIIGLINPAFWSLDNIFGLLRSNVVIGIMALGVLLVMISGG
IDVSFTAFAIAAMYLTVRSMVYLGYDGVLIPFVAATLIGLVLGAFNGLIIHRFRMIPLIV
TLGTGSIVRGLVLGLVGTSIVNINKMPKELIEFGKTDVISLTSATGSTFGLTAMFLVYLG
LALVIHLILTYTMIGRSVYAYGGSPEAAKRVGFNTGATIFFVYCIAGALAGFSGLLHSSM
IWLANPRDFVGLELDVIAAVVLGGASIFGGRGTVLGTLMGVFMLVMVKNSLIIMKVDTTW
QRVVVGLIIIIATAITAWRDRKSIA