Protein Info for Atu4816 in Agrobacterium fabrum C58

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 PF00534: Glycos_transf_1" amino acids 238 to 382 (145 residues), 68.2 bits, see alignment E=1.7e-22 PF13692: Glyco_trans_1_4" amino acids 241 to 369 (129 residues), 71.6 bits, see alignment E=2.1e-23 PF13524: Glyco_trans_1_2" amino acids 311 to 399 (89 residues), 33.9 bits, see alignment E=7.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4816)

Predicted SEED Role

"Glycosyltransferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH63 at UniProt or InterPro

Protein Sequence (427 amino acids)

>Atu4816 glycosyltransferase (Agrobacterium fabrum C58)
MKDKVVVSQLGARMHYAVPRIFASAGRLAHFYTDICATKGWPRIVNSFPATLYPAPVKRL
AGRLPKGVPTALTTVFSNFGLRSVLRHMRAKDVVEETSHAIWAGSIFSEMVARRGFHGAA
GLYAFSGDALEQMQAAKQQGLWTAVEQMIAPRDVVEMLLNQEMKRFPAWAGPVQENPHAR
LFAEREKAEWRLADVIVCPSEFVRKNVVACGGPEDRCVVVPYGVNAAVANNRPARMPGPI
RVLTVGEVGLRKGSPYVVEASRLMEGSARFRMAGRVRLADDVKQQISQWVELRGIVPRSQ
IAEEFRWADVFLLPSLCEGSATAVYEALAAGLPVITTENTGSVVRDGIEGFIVPVCDPEA
IATAVRALAGNPELMRSMSANALLRAAEHTVESYGERLLAVLSGPHLAGSVGLCQTEEAR
YLGNNTI