Protein Info for Atu4794 in Agrobacterium fabrum C58

Annotation: polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details PF13614: AAA_31" amino acids 508 to 647 (140 residues), 33.4 bits, see alignment E=2.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4794)

Predicted SEED Role

"Succinoglycan biosynthesis transport protein ExoP"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH53 at UniProt or InterPro

Protein Sequence (720 amino acids)

>Atu4794 polysaccharide biosynthesis protein (Agrobacterium fabrum C58)
MIQSSSSPGEQEGISRFISILRERRRAVFICFLASFAIAAIGYARTPIRYKAEATLALDV
RKLQALPTESVVSPLPQESPVLRTELDIIGSRSMAERVLVILQKDRLLEGRQTNSDRATN
DVTTLGNDAETSKKVDNLMTNVRVMNDGRSYTIYISYYAGDPALAAKVANAFGEAYIDYQ
IDLQTTATRRVSAWLGERLVSLRTALEESERQASQFREKSGLINTGGLPLQSQRLSSLNV
ELTTLQAKLAGSRARLATALALQKSGDGLGITEVLSSPTIQLLRAEQARVIRAIAQIDES
GAVMSPERPQLSSQLSSLNKQIDSEIAQIIAALRNEIEVNEKQRQEVEASLNDVQRAIST
TDMAMVQSGQLDREAAANRSIYETYLARYKQTIEQDGIATAEARIISSAMPSRKPTSPDA
GLWGLVALLLGCSTGLATAFILNFTDRSVGSITSLQQKTGLNVIGRIPRISFGEFQNKPG
KFSSGAADFYSAFADLQTHLQLAESKAKVIAFTSSADGEGKTFVIANLARSLAMSGVKLL
LIDANLRNPALGAEFDVGSTSHVAQAVSHEVTLDDIIQRDQASGVDIIIAEKSDMPPNLV
LGSKRFAGLIVEARQRYELILIEAPSVDHDLDLLRIATLSDAVSFVVRQDVADGTGMKNA
VIKLRVAGRPITGIILNGIRRPRKRQPPVWPRIFRDWNPHFKLRKRATSLRPPAVVHNER