Protein Info for Atu4785 in Agrobacterium fabrum C58

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 743 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 86 to 110 (25 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details amino acids 303 to 330 (28 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 379 to 401 (23 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details amino acids 460 to 485 (26 residues), see Phobius details amino acids 499 to 521 (23 residues), see Phobius details amino acids 527 to 547 (21 residues), see Phobius details amino acids 559 to 579 (21 residues), see Phobius details amino acids 589 to 608 (20 residues), see Phobius details amino acids 651 to 673 (23 residues), see Phobius details amino acids 693 to 715 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 240 to 428 (189 residues), 52.7 bits, see alignment E=2.3e-18 amino acids 538 to 710 (173 residues), 36.6 bits, see alignment E=2e-13

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to atu:Atu4785)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVV3 at UniProt or InterPro

Protein Sequence (743 amino acids)

>Atu4785 iron ABC transporter permease (Agrobacterium fabrum C58)
MTHGNRRLDIVLALGLAALVLVPWYRIESGFFGLGWLSDFPTSSQVAPGILQMITEGRTW
LFGVLIFFLLGAVARTLSDPILRGRLLVAAGAFGLAFLVLQGLAIGFIGWTWQATESLFG
AMADGQPSMGAGAVTMAFVFVLFISFGLAERGFMKGDVFVVSSISLLVFLVCVFVFYPIG
SMMVGAVQDFDGSFNPDGFIRNMRDPGIWSLDCVVGAGRCGVAWRTLFLAIMTAAGSTIL
GLAFALVATRTRFPFKKGLRLLTILPIITPPFVIGLALTLLFGRAGVVTEFMSSVFGIEP
GRWLYGLTGIWIAQVLSFTPISFLVLIGVVEGVSPSMEEASQTLRADRWRTFWRVSLPLM
KPGLANAFLIGFIESMADFGNPLVLGGSHGVLSTEIFFAVVGSQNDPSRAAVLAIVLLCF
TLSAFIAQRFWLAGKNFATVTGKGDSGAHIALPKSMSIAVHALVVPWMLFTIVVYGMILV
GGFVKTWGLDNTLTIEHYVRAFSVSLSNGSIAWTGVAWNSFWTTMEIALISAPLTAAVGL
LTAYIIVRQKFAGRNLFEFALMMSFAIPGTVIGVSYIMAFNLPPLEMTGSALILIACFVF
RNMPVGVRGGIAAMSQLDKSLDEASLTLRANSFRTIRLVVLPLLRPAIRAALVYSFVRAI
TSISAVIFLVSAQYNMATSYIVGLVENGEYGVAIAYSSMLIVVMITVIAGFQLIVGERRL
RRENRVAGLDAAKSVSHPQEKIA