Protein Info for Atu4742 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 107 PF13428: TPR_14" amino acids 18 to 58 (41 residues), 28.9 bits, see alignment E=3.7e-10 PF07719: TPR_2" amino acids 20 to 49 (30 residues), 23.6 bits, see alignment E=1.2e-08 PF13432: TPR_16" amino acids 22 to 78 (57 residues), 45.3 bits, see alignment E=3e-15 PF14559: TPR_19" amino acids 26 to 71 (46 residues), 32.7 bits, see alignment E=2.4e-11 PF13431: TPR_17" amino acids 39 to 69 (31 residues), 23.4 bits, see alignment E=1.5e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4742)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVR1 at UniProt or InterPro

Protein Sequence (107 amino acids)

>Atu4742 hypothetical protein (Agrobacterium fabrum C58)
MIEKLMKVLESGRDSPVLRFSLAKALMDTRQFEDAAQHLQEAIRQNPDYSAVWAALGECR
ERLGDHEGAAAAWIEGVAVAIRRGDIQAKRQMEVRFRRLQTRSLSAS